Info • Linnemannia elongata AD073 v1.0

Status

[September 2020] The Linnemannia elongata AD073 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Linnemannia elongata AD073 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.20
Sequencing read coverage depth 120.83x
# of contigs 156
# of scaffolds 156
# of scaffolds >= 2Kbp 153
Scaffold N50 21
Scaffold L50 (Mbp) 0.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.50, 1.76, 1.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 383608163 376276112 98.1%
Other Trinity_assembled_Illumina_transcriptome 57180 48307 84.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2142 1900
transcript 1689 1436
exon 471 267
intron 177 119
description:
protein length (aa) 482 394
exons per gene 3.59 3
# of gene models 13851


Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.