Status
The genome sequence and gene models of Moesziomyces aphidis DSM 70725 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on 11/08/2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Moesziomyces aphidis DSM 70725
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 17.92 |
| Sequencing read coverage depth | |
| # of contigs | 1968 |
| # of scaffolds | 42 |
| # of scaffolds >= 2Kbp | 33 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.71 |
| # of gaps | 1926 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 2.38, 2.07, 1.54 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1916 | 1581 |
| transcript | 1787 | 1491 |
| exon | 973 | 510 |
| intron | 156 | 97 |
| description: | ||
| protein length (aa) | 596 | 497 |
| exons per gene | 1.84 | 1 |
| # of gene models | 6011 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lorenz S, Guenther M, Grumaz C, Rupp S, Zibek S, Sohn K
Genome Sequence of the Basidiomycetous Fungus Pseudozyma aphidis DSM70725, an Efficient Producer of Biosurfactant Mannosylerythritol Lipids.
Genome Announc. 2014 Feb 13;2(1):. doi: 10.1128/genomeA.00053-14
Lorenz S, Guenther M, Grumaz C, Rupp S, Zibek S, Sohn K
Genome Sequence of the Basidiomycetous Fungus Pseudozyma aphidis DSM70725, an Efficient Producer of Biosurfactant Mannosylerythritol Lipids.
Genome Announc. 2014 Feb 13;2(1):. doi: 10.1128/genomeA.00053-14
Funding
This project was not sequenced at the JGI.
