Info • Podila epicladia KOD 1059

Status

This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 38.09
Sequencing read coverage depth
# of contigs 2936
# of scaffolds 2579
# of scaffolds >= 2Kbp 1954
Scaffold N50 363
Scaffold L50 (Mbp) 0.03
# of gaps 357
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.15, 0.13, 0.13


Gene Models ExternalModels
length (bp) of: average median
gene 1872 1559
transcript 1465 1182
exon 393 208
intron 151 103
description:
protein length (aa) 488 394
exons per gene 3.73 3
# of gene models 11339


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.