Info • Linnemannia gamsii NVP60


This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 49.48
Sequencing read coverage depth
# of contigs 7478
# of scaffolds 6418
# of scaffolds >= 2Kbp 4347
Scaffold N50 967
Scaffold L50 (Mbp) 0.02
# of gaps 1060
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.17, 0.13, 0.12

Gene Models ExternalModels
length (bp) of: average median
gene 1889 1572
transcript 1458 1149
exon 417 221
intron 175 121
protein length (aa) 486 383
exons per gene 3.50 3
# of gene models 13261


Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.