Info • Podila humilis KOD 1050

Status

This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 29.17
Sequencing read coverage depth
# of contigs 2591
# of scaffolds 2079
# of scaffolds >= 2Kbp 2078
Scaffold N50 551
Scaffold L50 (Mbp) 0.02
# of gaps 512
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.10, 0.09, 0.09


Gene Models ExternalModels
length (bp) of: average median
gene 2149 1765
transcript 1710 1368
exon 451 225
intron 159 113
description:
protein length (aa) 570 456
exons per gene 3.79 3
# of gene models 8465


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.