Info • Moniliella sp. MCA 3643 v1.0

Status

[August 2017] The Moniliella sp. MCA 3643 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Moniliella sp. MCA 3643 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.92
Sequencing read coverage depth 179.55x
# of contigs 60
# of scaffolds 60
# of scaffolds >= 2Kbp 59
Scaffold N50 13
Scaffold L50 (Mbp) 0.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.47, 1.39, 1.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 19450 18602 95.6%
Ests est.fasta 85718599 85399239 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1777 1473
transcript 1663 1383
exon 798 503
intron 108 63
description:
protein length (aa) 497 397
exons per gene 2.08 2
# of gene models 9189


Collaborators

Dr. Catherine Aime, Purdue University, IN
Dr. Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.