Status
The genome sequence and gene models of Monoraphidium neglectum have not been determined by the JGI, but were downloaded from NCBI, on June 20, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Monoraphidium neglectum release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 69.71 |
| Sequencing read coverage depth | 49.30x |
| # of contigs | 11902 |
| # of scaffolds | 6720 |
| # of scaffolds >= 2Kbp | 6720 |
| Scaffold N50 | 1302 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 5182 |
| % of scaffold length in gaps | 3.4% |
| Three largest Scaffolds (Mbp) | 0.14, 0.11, 0.10 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2265 | 1802 |
| transcript | 1045 | 795 |
| exon | 207 | 129 |
| intron | 304 | 256 |
| description: | ||
| protein length (aa) | 348 | 265 |
| exons per gene | 5.04 | 4 |
| # of gene models | 16755 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics. 2013 Dec 28;14():926. doi: 10.1186/1471-2164-14-926
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics. 2013 Dec 28;14():926. doi: 10.1186/1471-2164-14-926
Funding
This project was not sequenced at the JGI.
