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Info • Mortierella sp. AD185 v1.0

Status

[September 2019] The Mortierella sp. AD185 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. Assembly of the Mollicutes-related endobacterium is also available in the downloads section.

Summary statistics for the Mortierella sp. AD185 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.63
Sequencing read coverage depth 689.26x
# of contigs 51
# of scaffolds 51
# of scaffolds >= 2Kbp 51
Scaffold N50 7
Scaffold L50 (Mbp) 2.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.57, 5.38, 3.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 36596587 35210277 96.2%
Other Trinity_assembled_Illumina_transcriptome 45775 43556 95.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2114 1762
transcript 1728 1404
exon 470 245
intron 146 107
description:
protein length (aa) 514 401
exons per gene 3.68 3
# of gene models 15422


Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.