Info • Mortierella alpina KOD1005 v1.0

Status

[September 2020] The Mortierella alpina KOD1005 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mortierella alpina KOD1005 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.62
Sequencing read coverage depth 158.4x
# of contigs 69
# of scaffolds 69
# of scaffolds >= 2Kbp 64
Scaffold N50 8
Scaffold L50 (Mbp) 1.67
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.03, 3.46, 3.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 76839682 76419288 99.5%
Other Trinity_assembled_Illumina_transcriptome 35007 33387 95.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2103 1809
transcript 1697 1418
exon 438 249
intron 143 107
description:
protein length (aa) 495 398
exons per gene 3.88 3
# of gene models 11816


Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.