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Info • Morchella angusticeps Mel-15 v1.0

Status

[March 2020] The Morchella angusticeps Mel-15 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella angusticeps Mel-15 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.79
Sequencing read coverage depth 136.99x
# of contigs 52
# of scaffolds 52
# of scaffolds >= 2Kbp 52
Scaffold N50 12
Scaffold L50 (Mbp) 1.97
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.08, 3.72, 2.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61129 58607 95.9%
Ests est.fasta 119563868 110403141 92.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1789 1533
transcript 1558 1314
exon 440 279
intron 93 67
description:
protein length (aa) 440 349
exons per gene 3.54 3
# of gene models 11637


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.