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Info • Morchella importuna CCBAS932 v1.0

Status

Assembly v1 (January 2014) is a standard draft assembly of Illumina gDNA reads. A total of 540 scaffolds and 48.2 Mbp were assembled using AllPathsLG.

Summary statistics for the Morchella importuna CCBAS932 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.21
Sequencing read coverage depth 67.8x
# of contigs 1793
# of scaffolds 540
# of scaffolds >= 2Kbp 423
Scaffold N50 29
Scaffold L50 (Mbp) 0.60
# of gaps 1253
% of scaffold length in gaps 2.1%
Three largest Scaffolds (Mbp) 1.46, 1.39, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 40044 39164 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1668 1391
transcript 1427 1161
exon 413 257
intron 100 67
description:
protein length (aa) 410 319
exons per gene 3.46 3
# of gene models 11600


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.