Status
[June 2022] The genome assembly of Morchella crassipes M84 was not determined by the Joint Genome Institute (JGI), and was sequenced with Pacbio at the Los Alamos National Laboratory (LANL). Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. The transcriptome was sequenced with Illumina and assembled with Trinity by JGI. Subsequently, the JGI Annotation Pipeline was used to generate structural and functional annotations.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.77 |
| # of contigs | 52 |
| # of scaffolds | 52 |
| # of scaffolds >= 2Kbp | 52 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 1.87 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.82, 3.99, 3.66 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 79367 | 71405 | 90.0% |
| Ests | est.fasta | 154614438 | 152589239 | 98.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1817 | 1573 |
| transcript | 1599 | 1358 |
| exon | 454 | 287 |
| intron | 88 | 66 |
| description: | ||
| protein length (aa) | 447 | 352 |
| exons per gene | 3.53 | 3 |
| # of gene models | 10480 |
Collaborators
- Patrick Chain, Los Alamos National Laboratory, Los Alamos, NM, USA
- Pilar Junier, University of Neuchatel (Academic), Neuchatel, Switzerland
- Saskia Bindschedler, University of Neuchatel (Academic), Neuchatel, Switzerland
- La Verne Graves, Los Alamos National Laboratory, Los Alamos, NM, USA
- Aaron Robinson, Los Alamos National Laboratory, Los Alamos, NM, USA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Morchellaceae Morchella
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
