Info • Morchella diminutiva Mes-2 v1.0

Status

[June 2020] The Morchella diminutiva Mes-2 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella diminutiva Mes-2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.42
Sequencing read coverage depth 238.88x
# of contigs 49
# of scaffolds 49
# of scaffolds >= 2Kbp 49
Scaffold N50 11
Scaffold L50 (Mbp) 1.76
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.16, 3.62, 3.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66150 62961 95.2%
Ests est.fasta 92099865 89841882 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1786 1528
transcript 1565 1314
exon 439 280
intron 88 66
description:
protein length (aa) 443 351
exons per gene 3.56 3
# of gene models 10998


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.