Info • Morchella disparilis PhC 293 v1.0

Status

[May 2020] The Morchella disparilis PhC 293 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella disparilis PhC 293 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.42
Sequencing read coverage depth 58.87x
# of contigs 63
# of scaffolds 63
# of scaffolds >= 2Kbp 63
Scaffold N50 12
Scaffold L50 (Mbp) 1.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.68, 2.53, 2.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61630 52913 85.9%
Ests est.fasta 223617166 221126209 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1802 1549
transcript 1564 1320
exon 428 269
intron 92 68
description:
protein length (aa) 441 352
exons per gene 3.66 3
# of gene models 10570


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.