Info • Mortierella elongata MPI-CAGE-AA-0104 v1.0

Status

[March 2018] The Mortierella elongata MPI-CAGE-AA-0104 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mortierella elongata MPI-CAGE-AA-0104 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.91
Sequencing read coverage depth 47.98x
# of contigs 79
# of scaffolds 79
# of scaffolds >= 2Kbp 78
Scaffold N50 10
Scaffold L50 (Mbp) 1.94
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.16, 3.86, 3.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44758 41309 92.3%
Ests est.fasta 137851902 129015124 93.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2101 1849
transcript 1647 1387
exon 461 262
intron 179 121
description:
protein length (aa) 474 386
exons per gene 3.57 3
# of gene models 14234


Collaborators

Stéphane Hacquard, Max Planck Gesellschaft, München

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.