Info • Morchella esculenta PhC 158 v1.0

Status

[October 2021] The Morchella esculenta PhC 158 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 51.15
Sequencing read coverage depth 17.15x
# of contigs 53
# of scaffolds 53
# of scaffolds >= 2Kbp 52
Scaffold N50 12
Scaffold L50 (Mbp) 1.61
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.05, 3.24, 2.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50771 47688 93.9%
Ests est.fasta 172433636 169715225 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1829 1567
transcript 1606 1354
exon 443 279
intron 87 66
description:
protein length (aa) 457 366
exons per gene 3.62 3
# of gene models 10777


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.