Info • Morchella eximia DOB1602 v1.0

Status

[May 2022] The Morchella eximia DOB1602 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella eximia DOB1602 v1.0 release are below.

Genome Assembly
Genome Assembly size (Mbp) 47.57
Sequencing read coverage depth 86.0x
# of contigs 67
# of scaffolds 67
# of scaffolds >= 2Kbp 67
Scaffold N50 13
Scaffold L50 (Mbp) 1.07
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.10, 2.80, 2.79


Note: lower than expected mapping of EST clusters is attributed to a small read percentage contributing to the creation of unmatched contigs. Unmapped RNA reads hit organisms in bacteria, Aspergillus, and Penicillium.

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 92008 74713 81.2%
Ests est.fasta 187285608 183191546 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1784 1525
transcript 1571 1320
exon 451 286
intron 88 67
description:
protein length (aa) 440 345
exons per gene 3.48 3
# of gene models 11510


Collaborators

Tom Bruns at University of California Berkeley

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.