Status
[May 2022] The Morchella eximia DOB1602 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Morchella eximia DOB1602 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 47.57 |
| Sequencing read coverage depth | 86.0x |
| # of contigs | 67 |
| # of scaffolds | 67 |
| # of scaffolds >= 2Kbp | 67 |
| Scaffold N50 | 13 |
| Scaffold L50 (Mbp) | 1.07 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.10, 2.80, 2.79 |
Note: lower than expected mapping of EST clusters is attributed to a small read percentage contributing to the creation of unmatched contigs. Unmapped RNA reads hit organisms in bacteria, Aspergillus, and Penicillium.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 92008 | 74713 | 81.2% |
| Ests | est.fasta | 187285608 | 183191546 | 97.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1784 | 1525 |
| transcript | 1571 | 1320 |
| exon | 451 | 286 |
| intron | 88 | 67 |
| description: | ||
| protein length (aa) | 440 | 345 |
| exons per gene | 3.48 | 3 |
| # of gene models | 11510 |
Collaborators
Tom Bruns at University of California Berkeley
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Morchellaceae Morchella
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
