Info • Morchella galilaea PhC 278 v1.0

Status

[October 2021] The Morchella galilaea PhC 278 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 49.33
Sequencing read coverage depth 252.16x
# of contigs 83
# of scaffolds 83
# of scaffolds >= 2Kbp 83
Scaffold N50 18
Scaffold L50 (Mbp) 0.96
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.53, 2.28, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52416 48799 93.1%
Ests est.fasta 172734994 168276199 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1834 1575
transcript 1600 1351
exon 439 275
intron 91 67
description:
protein length (aa) 456 364
exons per gene 3.65 3
# of gene models 10239


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.