Status
Assembly v1 (July 2015) is a standard draft assembly of Illumina gDNA reads using AllPathsLG.
Summary statistics for the Morchella importuna SCYDJ1-A1
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.80 |
| Sequencing read coverage depth | 83.9x |
| # of contigs | 1509 |
| # of scaffolds | 338 |
| # of scaffolds >= 2Kbp | 294 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.61 |
| # of gaps | 1171 |
| % of scaffold length in gaps | 2.2% |
| Three largest Scaffolds (Mbp) | 1.99, 1.58, 1.24 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 45396 | 44549 | 98.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1625 | 1362 |
| transcript | 1423 | 1170 |
| exon | 431 | 278 |
| intron | 90 | 67 |
| description: | ||
| protein length (aa) | 398 | 309 |
| exons per gene | 3.30 | 3 |
| # of gene models | 11971 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Tan H, Kohler A, Miao R, Liu T, Zhang Q, Zhang B, Jiang L, Wang Y, Xie L, Tang J, Li X, Liu L, Grigoriev IV, Daum C, LaButti K, Lipzen A, Kuo A, Morin E, Drula E, Henrissat B, Wang B, Huang Z, Gan B, Peng W, Martin FM
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Environ Microbiol. 2019 Oct;21(10):3909-3926. doi: 10.1111/1462-2920.14741
Tan H, Kohler A, Miao R, Liu T, Zhang Q, Zhang B, Jiang L, Wang Y, Xie L, Tang J, Li X, Liu L, Grigoriev IV, Daum C, LaButti K, Lipzen A, Kuo A, Morin E, Drula E, Henrissat B, Wang B, Huang Z, Gan B, Peng W, Martin FM
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Environ Microbiol. 2019 Oct;21(10):3909-3926. doi: 10.1111/1462-2920.14741
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
