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Info • Morchella importuna SCYDJ1-A1 v1.0

Status

Assembly v1 (July 2015) is a standard draft assembly of Illumina gDNA reads using AllPathsLG.

Summary statistics for the Morchella importuna SCYDJ1-A1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.80
Sequencing read coverage depth 83.9x
# of contigs 1509
# of scaffolds 338
# of scaffolds >= 2Kbp 294
Scaffold N50 27
Scaffold L50 (Mbp) 0.61
# of gaps 1171
% of scaffold length in gaps 2.2%
Three largest Scaffolds (Mbp) 1.99, 1.58, 1.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45396 44549 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1625 1362
transcript 1423 1170
exon 431 278
intron 90 67
description:
protein length (aa) 398 309
exons per gene 3.30 3
# of gene models 11971


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.