Info • Morchella prava Mes-7 v1.0

Status

[June 2020] The Morchella prava Mes-7 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella prava Mes-7 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.91
Sequencing read coverage depth 203.45x
# of contigs 80
# of scaffolds 80
# of scaffolds >= 2Kbp 80
Scaffold N50 10
Scaffold L50 (Mbp) 1.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.71, 3.67, 3.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 64566 61381 95.1%
Ests est.fasta 102475657 101084868 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1781 1524
transcript 1565 1317
exon 439 281
intron 86 65
description:
protein length (aa) 443 349
exons per gene 3.56 3
# of gene models 11010


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.