Info • Morchella pulchella Mel-31 v1.0

Status

[June 2020] The Morchella pulchella Mel-31 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella pulchella Mel-31 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.27
Sequencing read coverage depth 181.6x
# of contigs 61
# of scaffolds 61
# of scaffolds >= 2Kbp 61
Scaffold N50 12
Scaffold L50 (Mbp) 1.84
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.82, 3.81, 2.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55013 52224 94.9%
Ests est.fasta 111732605 105982161 94.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1785 1521
transcript 1552 1304
exon 430 273
intron 91 67
description:
protein length (aa) 441 352
exons per gene 3.61 3
# of gene models 11459


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.