Info • Morchella semilibera PhC 218 v1.0

Status

[June 2020] The Morchella semilibera PhC 218 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella semilibera PhC 218 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.52
Sequencing read coverage depth 118.09x
# of contigs 140
# of scaffolds 140
# of scaffolds >= 2Kbp 140
Scaffold N50 14
Scaffold L50 (Mbp) 1.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.68, 2.28, 2.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 64309 57052 88.7%
Ests est.fasta 175938700 172415132 98.0%


Gene Models FilteredModels2
length (bp) of: average median
gene 1792 1539
transcript 1558 1316
exon 433 273
intron 92 67
description:
protein length (aa) 441 351
exons per gene 3.59 3
# of gene models 10773


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.