Status
[May 2018] The Morchella snyderi CBS 144464 (DOB2414) genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Morchella snyderi CBS 144464
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.77 |
| Sequencing read coverage depth | 160.81x |
| # of contigs | 81 |
| # of scaffolds | 81 |
| # of scaffolds >= 2Kbp | 81 |
| Scaffold N50 | 15 |
| Scaffold L50 (Mbp) | 1.25 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.63, 2.99, 2.07 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 51451 | 48094 | 93.5% |
| Ests | est.fasta | 140484541 | 137734685 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1833 | 1581 |
| transcript | 1593 | 1344 |
| exon | 433 | 274 |
| intron | 92 | 67 |
| description: | ||
| protein length (aa) | 449 | 357 |
| exons per gene | 3.68 | 3 |
| # of gene models | 11100 |
Collaborators
- Tom Bruns at University of California Berkeley
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407
Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
