Info • Morchella snyderi CBS 144464 v1.0

Status

[May 2018] The Morchella snyderi CBS 144464 (DOB2414) genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella snyderi CBS 144464 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.77
Sequencing read coverage depth 160.81x
# of contigs 81
# of scaffolds 81
# of scaffolds >= 2Kbp 81
Scaffold N50 15
Scaffold L50 (Mbp) 1.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.63, 2.99, 2.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51451 48094 93.5%
Ests est.fasta 140484541 137734685 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1833 1581
transcript 1593 1344
exon 433 274
intron 92 67
description:
protein length (aa) 449 357
exons per gene 3.68 3
# of gene models 11100


Collaborators

  • Tom Bruns at University of California Berkeley

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.