Status
[December 2023] The Mortierella alpina 312A_T17_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.46 |
| Sequencing read coverage depth | 157.51x |
| # of contigs | 437 |
| # of scaffolds | 416 |
| # of scaffolds >= 2Kbp | 348 |
| Scaffold N50 | 36 |
| Scaffold L50 (Mbp) | 0.34 |
| # of gaps | 21 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.37, 0.83, 0.79 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 52497 | 43936 | 83.7% |
| Ests | est.fasta | 239195273 | 236353379 | 98.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2209 | 1897 |
| transcript | 1797 | 1499 |
| exon | 456 | 253 |
| intron | 142 | 107 |
| description: | ||
| protein length (aa) | 525 | 427 |
| exons per gene | 3.94 | 3 |
| # of gene models | 12295 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mortierellomycotina Mortierella
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
