Info • Morchella ulmeria NRRL36825 v1.0

Status

[July 2021] The Morchella ulmeria NRRL36825 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 51.24
Sequencing read coverage depth 56.73x
# of contigs 56
# of scaffolds 56
# of scaffolds >= 2Kbp 55
Scaffold N50 11
Scaffold L50 (Mbp) 1.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.93, 3.46, 3.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57816 54964 95.1%
Ests est.fasta 87989108 86103131 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1867 1603
transcript 1630 1362
exon 438 278
intron 89 66
description:
protein length (aa) 458 361
exons per gene 3.72 3
# of gene models 10731


Collaborators

 

 



Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.