Status
[August 2023] Bacillariophyceae sp. bin 90 v1.0 genome was coassembled from the eukaryotic fraction of the HAVOC (Ridges - Safe HAVens for ice-associated flaura and fauna in a seasonally ice-covered Arctic OCean) samples from MOSAiC, assembled with metahipmer2, and annotated with the JGI Annotation Pipeline.
The eukaryotic fraction was determined by taxonomically identifying contigs from each sample assembly individually using MMSeqs2, mapping to the MMETSP and NR databases, before pooling all reads mapping to these contigs.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.07 |
| Sequencing read coverage depth | |
| # of contigs | 2963 |
| # of scaffolds | 2963 |
| # of scaffolds >= 2Kbp | 2963 |
| Scaffold N50 | 589 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.11, 0.10, 0.09 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1538 | 1272 |
| transcript | 1414 | 1164 |
| exon | 793 | 583 |
| intron | 160 | 130 |
| description: | ||
| protein length (aa) | 471 | 388 |
| exons per gene | 1.78 | 1 |
| # of gene models | 13169 |
Collaborators
- Thomas Mock at University of East Anglia, UK
- William Boulton at University of East Anglia, UK
Links
- JGI EcoGroup Portals: Algae Oceanic phytoplankton
- JGI PhyloGroup Portals: Heterokonta Bacillariophyta Bacillariophyceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
