Info • Linnemannia zychae NRRL 2592

Status

This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 45.70
Sequencing read coverage depth
# of contigs 1288
# of scaffolds 1260
# of scaffolds >= 2Kbp 795
Scaffold N50 120
Scaffold L50 (Mbp) 0.12
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.61, 0.41, 0.38


Gene Models ExternalModels
length (bp) of: average median
gene 2171 1842
transcript 1667 1374
exon 418 208
intron 171 118
description:
protein length (aa) 556 458
exons per gene 3.99 3
# of gene models 11284


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.