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Info • Mrakia frigida ATCC 22029 v1.0

Status

The Mrakia frigida ATCC22029 genome was sequenced using Illumina, assembled with AllPathsLG version R49403 (Gnerre et al. 2010), and annotated with the JGI annotation pipeline. No mitochondrial genome was assembled.

Summary statistics for the Mrakia frigida ATCC22029 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.16
Sequencing read coverage depth 95.2x
# of contigs 202
# of scaffolds 118
# of scaffolds >= 2Kbp 100
Scaffold N50 15
Scaffold L50 (Mbp) 0.72
# of gaps 84
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 1.37, 1.27, 1.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40060 38727 96.7%
Ests est.fasta 121147398 111279917 91.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 2319 1988
transcript 1594 1339
exon 199 121
intron 105 89
description:
protein length (aa) 458 370
exons per gene 8.02 6
# of gene models 9516


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.