Info • Mucor ambiguus NBRC 6742

Status

The genome sequence and gene models of Mucor ambiguus NBRC 6742 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Mucor ambiguus NBRC 6742 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.74
Sequencing read coverage depth
# of contigs 8268
# of scaffolds 1283
# of scaffolds >= 2Kbp 892
Scaffold N50 111
Scaffold L50 (Mbp) 0.11
# of gaps 6985
% of scaffold length in gaps 22.0%
Three largest Scaffolds (Mbp) 0.54, 0.51, 0.51


Gene Models ExternalModels
length (bp) of: average median
gene 1636 1334
transcript 1396 1128
exon 341 185
intron 79 61
description:
protein length (aa) 465 376
exons per gene 4.10 3
# of gene models 11343


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lebreton A, Corre E, Jany JL, Brillet-Guéguen L, Pèrez-Arques C, Garre V, Monsoor M, Debuchy R, Le Meur C, Coton E, Barbier G, Meslet-Cladière L
Comparative genomics applied to Mucor species with different lifestyles.
BMC Genomics. 2020 Feb 10;21(1):135. doi: 10.1186/s12864-019-6256-2

Links

Funding

This project was not sequenced at the JGI.