Info • Mucor circinelloides MU402 v1.0

Status

[January 2019] The Mucor circinelloides MU402 genome was sequenced with PacBio, assembled with Falcon and annotated with the JGI Annotation Pipeline. The mitochondrial genome was assembled separately and is available in the downloads section. As MU402 is derived from CBS277.49, when predicted gene models were nearly identical to those from CBS277.49, manual curations were carried over to MU402 models to maximize details on gene function. A track of models from CBS277.49 and their locations in MU402 are also available on the genome browser. Note: scaffold_17 is 99.6% identical to the end of scaffold_1 and could have potentially been erroneously separated out during gap closing by FinisherSC. Gene models on this scaffold should be considered carefully if included in downstream analysis.

Summary statistics for the Mucor circinelloides MU402 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.82
Sequencing read coverage depth 193.22x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 4
Scaffold L50 (Mbp) 4.57
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.64, 4.88, 4.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39144 35761 91.4%
Ests est.fasta 83722492 83037828 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1676 1435
transcript 1462 1242
exon 364 211
intron 73 62
description:
protein length (aa) 432 357
exons per gene 4.01 3
# of gene models 11843


Collaborators

Victoriano Garre, Universidad de Murcia, Spain

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.