Status
[January 2019] The Mucor lusitanicus MU402 genome was sequenced with PacBio, assembled with Falcon and annotated with the JGI Annotation Pipeline. The mitochondrial genome was assembled separately and is available in the downloads section. As MU402 is derived from CBS277.49, when predicted gene models were nearly identical to those from CBS277.49, manual curations were carried over to MU402 models to maximize details on gene function. A track of models from CBS277.49 and their locations in MU402 are also available on the genome browser. Note: scaffold_17 is 99.6% identical to the end of scaffold_1 and could have potentially been erroneously separated out during gap closing by FinisherSC. Gene models on this scaffold should be considered carefully if included in downstream analysis.
Genome Assembly | |
Genome Assembly size (Mbp) | 36.82 |
Sequencing read coverage depth | 193.22x |
# of contigs | 24 |
# of scaffolds | 24 |
# of scaffolds >= 2Kbp | 24 |
Scaffold N50 | 4 |
Scaffold L50 (Mbp) | 4.57 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 5.64, 4.88, 4.67 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 39144 | 35761 | 91.4% |
Ests | est.fasta | 83722492 | 83037828 | 99.2% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1676 | 1435 |
transcript | 1462 | 1242 |
exon | 364 | 211 |
intron | 73 | 62 |
description: | ||
protein length (aa) | 432 | 357 |
exons per gene | 4.01 | 3 |
# of gene models | 11843 |
Collaborators
Victoriano Garre, Universidad de Murcia, Spain
Genome Reference(s)
Navarro-Mendoza MI, Pérez-Arques C, Panchal S, Nicolás FE, Mondo SJ, Ganguly P, Pangilinan J, Grigoriev IV, Heitman J, Sanyal K, Garre V
Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres.
Curr Biol. 2019 Nov 18;29(22):3791-3802.e6. doi: 10.1016/j.cub.2019.09.024
Links
- Mucor lusitanicus CBS277.49 (Mucci2)
- JGI PhyloGroup Portals: Fungi Mucoromycota Mucoromycotina Mucorales