Status
The genome of Mucor endophyticus UBOCC-A-113049 was not sequenced at JGI. Rather, it was sequenced and annotated by the Jany lab at the Université de Bretagne Occidentale and was imported into MycoCosm for comparative purposes. Please note that this copy of the genome is not maintained by the Jany lab and therefore is not automatically updated.
Summary statistics for the Mucor endophyticus v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.00 |
| Sequencing read coverage depth | |
| # of contigs | 1573 |
| # of scaffolds | 159 |
| # of scaffolds >= 2Kbp | 74 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.96 |
| # of gaps | 1414 |
| % of scaffold length in gaps | 2.0% |
| Three largest Scaffolds (Mbp) | 4.53, 2.23, 2.14 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1714 | 1400 |
| transcript | 1426 | 1158 |
| exon | 315 | 170 |
| intron | 84 | 67 |
| description: | ||
| protein length (aa) | 475 | 386 |
| exons per gene | 4.53 | 4 |
| # of gene models | 11445 |
Collaborators
Emmanuel Coton, Université de Bretagne Occidentale, France
Jean-Luc Jany, Université de Bretagne Occidentale, France
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lebreton A, Corre E, Jany JL, Brillet-Guéguen L, Pèrez-Arques C, Garre V, Monsoor M, Debuchy R, Le Meur C, Coton E, Barbier G, Meslet-Cladière L
Comparative genomics applied to Mucor species with different lifestyles.
BMC Genomics. 2020 Feb 10;21(1):135. doi: 10.1186/s12864-019-6256-2
Lebreton A, Corre E, Jany JL, Brillet-Guéguen L, Pèrez-Arques C, Garre V, Monsoor M, Debuchy R, Le Meur C, Coton E, Barbier G, Meslet-Cladière L
Comparative genomics applied to Mucor species with different lifestyles.
BMC Genomics. 2020 Feb 10;21(1):135. doi: 10.1186/s12864-019-6256-2
Funding
This project was not sequenced at the JGI.
