Info • Mucor mucedo NRRL 3635 v1.0

Status

[December 2018] The Mucor mucedo NRRL 3635 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mucor mucedo NRRL 3635 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.09
Sequencing read coverage depth 390.4x
# of contigs 456
# of scaffolds 456
# of scaffolds >= 2Kbp 448
Scaffold N50 68
Scaffold L50 (Mbp) 0.20
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.78, 0.61, 0.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52082 44424 85.3%
Ests est.fasta 170156554 165361684 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1602 1360
transcript 1341 1116
exon 333 193
intron 88 66
description:
protein length (aa) 397 317
exons per gene 4.03 3
# of gene models 14052


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.