Info • Multifurca ochricompacta BPL690 v1.0

Status

[January 2017] The Multifurca ochricompacta BPL690 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Multifurca ochricompacta BPL690 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Multifurca ochricompacta BPL690 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.70
Sequencing read coverage depth 30.89x
# of contigs 772
# of scaffolds 772
# of scaffolds >= 2Kbp 751
Scaffold N50 68
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.31, 1.44, 1.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 99102 93616 94.5%
Ests est.fasta 136760999 135482892 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1489
transcript 1409 1165
exon 237 150
intron 71 59
description:
protein length (aa) 407 325
exons per gene 5.96 5
# of gene models 10514


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.