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Info • Mutinus elegans ME.BST v1.0

Status

[March 2015] The Mutinus elegans ME.BST genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).

Summary statistics for the Mutinus elegans ME.BST v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.78
Sequencing read coverage depth 85.3x
# of contigs 3570
# of scaffolds 1095
# of scaffolds >= 2Kbp 882
Scaffold N50 92
Scaffold L50 (Mbp) 0.14
# of gaps 2475
% of scaffold length in gaps 8.0%
Three largest Scaffolds (Mbp) 1.42, 1.16, 0.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 38584 37942 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1603 1344
transcript 1286 1063
exon 221 140
intron 68 58
description:
protein length (aa) 376 299
exons per gene 5.83 4
# of gene models 14626


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.