Status
[March 2015] The Mutinus elegans ME.BST genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).
Summary statistics for the Mutinus elegans ME.BST v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.78 |
| Sequencing read coverage depth | 85.3x |
| # of contigs | 3570 |
| # of scaffolds | 1095 |
| # of scaffolds >= 2Kbp | 882 |
| Scaffold N50 | 92 |
| Scaffold L50 (Mbp) | 0.14 |
| # of gaps | 2475 |
| % of scaffold length in gaps | 8.0% |
| Three largest Scaffolds (Mbp) | 1.42, 1.16, 0.81 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 38584 | 37942 | 98.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1603 | 1344 |
| transcript | 1286 | 1063 |
| exon | 221 | 140 |
| intron | 68 | 58 |
| description: | ||
| protein length (aa) | 376 | 299 |
| exons per gene | 5.83 | 4 |
| # of gene models | 14626 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Laboratory
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
