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Info • Mycena belliae CBHHK173m v1.0

Status

[November 2017] The Mycena belliae CBHHK173m genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena belliae CBHHK173m v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.44
Sequencing read coverage depth 83.18x
# of contigs 265
# of scaffolds 265
# of scaffolds >= 2Kbp 263
Scaffold N50 33
Scaffold L50 (Mbp) 0.55
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.67, 1.64, 1.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66203 64260 97.1%
Ests est.fasta 107355182 107046050 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1776 1509
transcript 1430 1224
exon 230 142
intron 68 54
description:
protein length (aa) 421 344
exons per gene 6.21 5
# of gene models 18074


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.