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Info • Mycena crocata CBHHK184 v1.0

Status

[November 2017] The Mycena crocata CBHHK184 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena crocata CBHHK184 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 93.99
Sequencing read coverage depth 42.29x
# of contigs 325
# of scaffolds 325
# of scaffolds >= 2Kbp 324
Scaffold N50 58
Scaffold L50 (Mbp) 0.50
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.89, 1.60, 1.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87501 85510 97.7%
Ests est.fasta 87722254 87038417 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1695 1436
transcript 1333 1132
exon 222 138
intron 74 55
description:
protein length (aa) 401 328
exons per gene 6.01 5
# of gene models 30221


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.