Info • Mycena epipterygia CBHHK145m v1.0

Status

[October 2017] The Mycena epipterygia CBHHK145m genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena epipterygia CBHHK145m v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 118.65
Sequencing read coverage depth 50.46x
# of contigs 199
# of scaffolds 199
# of scaffolds >= 2Kbp 199
Scaffold N50 34
Scaffold L50 (Mbp) 1.18
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.58, 3.35, 2.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69748 66463 95.3%
Ests est.fasta 105445820 104144699 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1526 1273
transcript 1188 980
exon 210 134
intron 74 55
description:
protein length (aa) 361 291
exons per gene 5.67 4
# of gene models 37563


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.