Info • Mycena haematopus CBHHK189 v1.0


[March 2017] The Mycena haematopus CBHHK189 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Mycena haematopus CBHHK189 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Mycena haematopus CBHHK189 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.81
Sequencing read coverage depth 67.05x
# of contigs 1062
# of scaffolds 1062
# of scaffolds >= 2Kbp 1046
Scaffold N50 108
Scaffold L50 (Mbp) 0.16
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.08, 1.01, 0.69

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87705 77856 88.8%
Ests est.fasta 146383534 140708788 96.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1589 1316
transcript 1279 1069
exon 224 141
intron 68 54
protein length (aa) 369 296
exons per gene 5.71 4
# of gene models 20804


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.