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Info • Mycotypha indica IMI 211999 v1.0

Status

[April 2020] The Mycotypha indica IMI 211999 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycotypha indica IMI 211999 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.09
Sequencing read coverage depth 251.06x
# of contigs 63
# of scaffolds 63
# of scaffolds >= 2Kbp 63
Scaffold N50 6
Scaffold L50 (Mbp) 1.87
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.64, 3.89, 2.78


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48857 46030 94.2%
Ests est.fasta 114396403 113624444 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1784 1544
transcript 1494 1265
exon 374 219
intron 99 81
description:
protein length (aa) 425 343
exons per gene 3.99 3
# of gene models 10509


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.