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Info • Mycena olivaceomarginata CBHHK47/15 v1.0

Status

[June 2018] The Mycena olivaceomarginata CBHHK47/15 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena olivaceomarginata CBHHK47/15 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 501.23
Sequencing read coverage depth 18.32x
# of contigs 4040
# of scaffolds 4040
# of scaffolds >= 2Kbp 4011
Scaffold N50 714
Scaffold L50 (Mbp) 0.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.57, 1.33, 1.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 178467 157485 88.2%
Ests est.fasta 159741234 158820644 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1455 1193
transcript 1093 897
exon 201 137
intron 84 55
description:
protein length (aa) 332 262
exons per gene 5.43 4
# of gene models 97030


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.