Info • Mycena pura 9144 v1.0


[November 2019] The Mycena pura genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

The RNA sample was heavily contaminated, resulting in poor mapping of transcriptome to the genome.

Summary statistics for the Mycena pura 9144 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 96.68
Sequencing read coverage depth 164.33x
# of contigs 241
# of scaffolds 241
# of scaffolds >= 2Kbp 241
Scaffold N50 39
Scaffold L50 (Mbp) 0.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.33, 2.68, 2.52

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 111380 63227 56.8%
Ests est.fasta 159092180 139365522 87.6%

Gene Models FilteredModels1
length (bp) of: average median
gene 1642 1378
transcript 1265 1044
exon 214 137
intron 79 54
protein length (aa) 403 328
exons per gene 5.90 5
# of gene models 28619


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.