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Info • Mycena rosella CBHHK067 v1.0

Status

[May 2017] The Mycena rosella CBHHK067 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena rosella CBHHK067 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 129.49
Sequencing read coverage depth 51.52x
# of contigs 1705
# of scaffolds 1705
# of scaffolds >= 2Kbp 1676
Scaffold N50 140
Scaffold L50 (Mbp) 0.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.49, 1.47, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 85464 76949 90.0%
Ests est.fasta 167226525 164360544 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1497 1238
transcript 1150 951
exon 207 135
intron 78 55
description:
protein length (aa) 348 277
exons per gene 5.54 4
# of gene models 34060


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.