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Info • Myrothecium inundatum CBS 120646 v1.0

Status

(Dec 2014) The Myrothecium inundatum CBS120646 genome was sequenced using Illumina and assembled using AllPathsLG.

Summary statistics for the Myrothecium inundatum CBS 120646 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.21
Sequencing read coverage depth 95
# of contigs 352
# of scaffolds 62
# of scaffolds >= 2Kbp 56
Scaffold N50 6
Scaffold L50 (Mbp) 2.01
# of gaps 290
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 5.52, 4.43, 3.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 30194 29836 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1785 1513
transcript 1627 1373
exon 571 357
intron 87 62
description:
protein length (aa) 458 367
exons per gene 2.85 2
# of gene models 13553


Collaborators

Kathryn Bushley, University of Minnesota

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.