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Info • Mytilinidion resinicola CBS 304.34 v1.0

Status

[Jan 2015] The Mytilinidion resinicola genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mytilinidion resinicola CBS 304.34 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.28
Sequencing read coverage depth 86.7x
# of contigs 507
# of scaffolds 73
# of scaffolds >= 2Kbp 57
Scaffold N50 10
Scaffold L50 (Mbp) 1.68
# of gaps 434
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 3.45, 3.07, 2.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 40183 36714 91.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1576 1358
transcript 1418 1213
exon 503 322
intron 89 59
description:
protein length (aa) 403 328
exons per gene 2.82 2
# of gene models 16794


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.