Info • Nakazawaea wickerhamii NRRL Y-2563

Status

The genome of Nakazawaea wickerhamii NRRL Y-2563 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Nakazawaea wickerhamii NRRL Y-2563 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.86
Sequencing read coverage depth 54x
# of contigs 144
# of scaffolds 131
# of scaffolds >= 2Kbp 38
Scaffold N50 5
Scaffold L50 (Mbp) 0.84
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.55, 0.97, 0.96


Gene Models ExternalModels
length (bp) of: average median
gene 1546 1270
transcript 1499 1246
exon 1147 954
intron 156 70
description:
protein length (aa) 499 415
exons per gene 1.31 1
# of gene models 5490


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.