Status
The genome sequence and gene models of Nannochloropsis gaditana B-31 have not been determined by the JGI, but were downloaded from NCBI, on November 13, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Nannochloropsis gaditana
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.59 |
| Sequencing read coverage depth | 20x |
| # of contigs | 3876 |
| # of scaffolds | 684 |
| # of scaffolds >= 2Kbp | 131 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.07 |
| # of gaps | 3192 |
| % of scaffold length in gaps | 1.2% |
| Three largest Scaffolds (Mbp) | 1.55, 1.44, 1.38 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1956 | 1693 |
| transcript | 1645 | 1391 |
| exon | 607 | 254 |
| intron | 184 | 160 |
| description: | ||
| protein length (aa) | 410 | 322 |
| exons per gene | 2.71 | 2 |
| # of gene models | 10929 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Corteggiani Carpinelli E, Telatin A, Vitulo N, Forcato C, D'Angelo M, Schiavon R, Vezzi A, Giacometti GM, Morosinotto T, Valle G
Chromosome scale genome assembly and transcriptome profiling of Nannochloropsis gaditana in nitrogen depletion.
Mol Plant. 2014 Feb;7(2):323-35. doi: 10.1093/mp/sst120
Corteggiani Carpinelli E, Telatin A, Vitulo N, Forcato C, D'Angelo M, Schiavon R, Vezzi A, Giacometti GM, Morosinotto T, Valle G
Chromosome scale genome assembly and transcriptome profiling of Nannochloropsis gaditana in nitrogen depletion.
Mol Plant. 2014 Feb;7(2):323-35. doi: 10.1093/mp/sst120
Funding
This project was not sequenced at the JGI.
