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Info • Nannochloropsis oceanica CCMP1779 v1.0
Please note that this organism is for archival use only. Please see the current Nannochloropsis oceanica CCMP1779 v2.0 site for the latest data and information.

Status

[March 2017] Nannochloropsis oceanica was sequenced by the laboratory of Christoph Benning at Michigan State University. The genome and gene models of Nannochloropsis oceanica were downloaded from Nannochloropsis oceanica CCMP1779 at Michigan State University on January 15, 2017. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by MSU and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into JGI.

Summary statistics for the Nannochloropsis oceanica CCMP1779 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.74
Sequencing read coverage depth
# of contigs 3731
# of scaffolds 3731
# of scaffolds >= 2Kbp 2120
Scaffold N50 269
Scaffold L50 (Mbp) 0.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.30, 0.19, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 1546 1287
transcript 1143 882
exon 417 184
intron 234 175
description:
protein length (aa) 346 259
exons per gene 2.74 2
# of gene models 12012


Genome Reference(s)

Funding

This project was not sequenced at the JGI.