Info • Naohidea sebacea CBS 8477 (P95) v1.0


[August 2015] The Naohidea sebacea CBS 8477 (P95) genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R46652, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Naohidea sebacea CBS 8477 (P95) v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.43
Sequencing read coverage depth 87.4x
# of contigs 294
# of scaffolds 124
# of scaffolds >= 2Kbp 89
Scaffold N50 9
Scaffold L50 (Mbp) 0.85
# of gaps 170
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 2.02, 1.88, 1.38

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 26756 24582 91.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1545 1298
transcript 1343 1122
exon 250 166
intron 48 46
protein length (aa) 384 306
exons per gene 5.38 4
# of gene models 10410


Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.