Info • Neurospora crassa FGSC2489 74-OR23-1VA (aka "74A") v3.0

Status

[February 2023] The Neurospora crassa FGSC2489 74-OR23-1VA  (aka "74A") v3.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.63
Sequencing read coverage depth 45.02x
# of contigs 10
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 4
Scaffold L50 (Mbp) 4.92
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.17, 6.95, 5.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 258117188 255222723 98.9%
Other IsoSeq_hq_reads_HPWAU 9556 9148 95.7%
Other IsoSeq_hq_reads_HTPTC 24300 23354 96.1%
Other RNAseq_contigs 56162 41048 73.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2029 1782
transcript 1845 1608
exon 700 423
intron 114 76
description:
protein length (aa) 508 418
exons per gene 2.64 2
# of gene models 9913


Collaborators

  • Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.