Info • Neurospora crassa FGSC8790 Homestead (aka "D30") v1.0

Status

[February 2023] The Neurospora crassa FGSC8790 Homestead (aka "D30") v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.21
Sequencing read coverage depth 250x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 5.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.17, 6.59, 5.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 57049201 56063144 98.3%
Other IsoSeq_hq_reads 54219 52772 97.3%
Other RNAseq_contigs 41341 38390 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 2021 1780
transcript 1835 1599
exon 697 422
intron 116 76
description:
protein length (aa) 504 415
exons per gene 2.63 2
# of gene models 9976


Collaborators

  • Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.